Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71671.1Putative efflux transporter. (448 aa)    
Predicted Functional Partners:
hopD
Putative squalene/phytoene synthase.
   
  
 0.535
hopE
Putative squalene/phytoene synthase.
   
  
 0.535
crtB-1
Putative phytoene synthase; PMID:8917308; PMID:15716454; carotenoid pigment gene cluster.
   
  
 0.535
CBG75559.1
Conserved hypothetical protein.
   
  
 0.535
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.533
CBG73171.1
Putative sensor kinase.
  
 
 0.533
CBG68225.1
Putative oxidoreductase; Cluster 0095 with SCAB4751, SCAB69701, SCAB83281 gap1/2; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.501
gap
Glyceraldehyde 3-phosphate dehydrogenase; Cluster 0095 with SCAB10521, SCAB69701, SCAB83281; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.501
gap-2
Glyceraldehyde-3-phosphate dehydrogenase; Cluster 0095 with SCAB4751, SCAB10521, SCAB83281; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.501
CBG75281.1
Putative glyceraldehyde-3-phosphate dehydrogenase; Cluster 0095 with SCAB4751, SCAB10521, SCAB69701; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.501
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.