Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71704.1Conserved hypothetical protein. (285 aa)    
Predicted Functional Partners:
CBG71703.1
Putative oxidoreductase.
 
 
 0.923
CBG71702.1
Putative MerR-family transcriptional regulator.
 
     0.851
CBG74199.1
Conserved hypothetical protein.
  
  
 0.725
CBG75734.1
Conserved hypothetical protein.
  
     0.696
CBG70981.1
Conserved hypothetical protein.
  
     0.693
CBG74196.1
Putative ABC-transporter subunit; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.681
CBG72187.1
Putative lipoprotein.
  
  
 0.677
CBG75475.1
Conserved hypothetical protein.
  
     0.675
CBG71974.1
Putative integral membrane protein.
  
     0.673
CBG70524.1
Putative regulatory protein; PMID: 10517581; PMID: 15921897.
 
 
 
 0.665
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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