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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71718.1Conserved hypothetical protein; PMID:16208464. (124 aa)    
Predicted Functional Partners:
CBG71719.1
Conserved hypothetical protein; PMID:16208464; TTA-Leu codon(s) 12 may indicate regulation by BldA.
     0.942
SCAB_0171
Conserved hypothetical protein, IS-associated; PMID:1650732; association with SCAB0161 suggested IS involvement, see also SCAB42801/42811, SCAB44411/SCAB44421.
 
     0.758
CBG71349.1
Conserved hypothetical protein, IS-associated; PMID:16208464; PMID:1650732; association with SCAB042811 suggests IS involvement, see also SCAB42801, SCAB0161/SCAB0171, SCAB44411/SCAB44421.
 
     0.758
CBG71504.1
Conserved hypothetical protein; Association with SCAB44411 suggests IS involvement, see also SCAB0161/0171, SCAB42801/SCAB42811.
 
     0.758
SCAB_0471
Conserved hypothetical protein, IS-associated; PMID:16208464; PMID:1650732; see SCAB0461; TTA-Leu codon(s) 12 may indicate regulation by BldA.
     0.754
SCAB_0371
Putative IS transposase; PMID:1332944; overlaps SCAB0372 seems to be common pattern see also SCAB0691, SCAB0991, SCAB23721, SCAB42901, SCAB90821; TTA-Leu codon(s) 4 may indicate regulation by BldA.
  
     0.472
SCAB_0691
Putative IS transposase; PMID:1332944; overlaps SCAB0692 seems to be common pattern see also SCAB0371, SCAB0991, SCAB23721, SCAB42901, SCAB90821.
  
     0.472
SCAB_0991
Putative IS transposase; PMID:1332944; see also SCAB0371, SCAB0691, SCAB23721, SCAB42901, SCAB90821; TTA-Leu codon(s) 4 may indicate regulation by BldA.
  
     0.472
SCAB_23721
Conserved hypothetical protein (fragment).
  
     0.472
CBG76014.1
Putative IS transposase; PMID:1332944; overlaps, seems to be common pattern see also SCAB0371, SCAB0691, SCAB0991, SCAB23721, SCAB42901; TTA-Leu codon(s) 4 may indicate regulation by BldA.
  
     0.472
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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