Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71768.1Conserved hypothetical protein. (296 aa)    
Predicted Functional Partners:
CBG71769.1
Conserved hypothetical protein.
       0.816
CBG71772.1
Putative polysaccharide biosynthesis protein.
       0.677
CBG74850.1
Putative membrane protein; No significant db matches.
       0.526
CBG74851.1
Putative DNA-binding protein.
       0.526
CBG75585.1
Hypothetical protein.
       0.526
CBG71767.1
Conserved hypothetical protein.
       0.454
CBG71773.1
Putative integral membrane protein.
       0.438
CBG71770.1
Putative two component system response regulator.
       0.422
CBG71771.1
Putative two component system sensor kinase.
       0.422
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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