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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71773.1Putative integral membrane protein. (746 aa)    
Predicted Functional Partners:
CBG71772.1
Putative polysaccharide biosynthesis protein.
 
  
 0.955
CBG68591.1
Putative glycosyl transferase.
 
  
 0.880
CBG71771.1
Putative two component system sensor kinase.
 
    0.797
CBG71770.1
Putative two component system response regulator.
 
   
 0.781
CBG71769.1
Conserved hypothetical protein.
       0.508
CBG71774.1
Putative major facilitator efflux protein.
     
 0.494
CBG71768.1
Conserved hypothetical protein.
       0.466
CBG72608.1
Putative bi-functional transferase/deacetylase.
  
  
 0.430
CBG72609.1
Putative integral membrane protein.
  
  
 0.430
CBG75339.1
Putative type I polyketide synthase; PMID:16207901; PMID:16085885; PMID:11094342; PMID:14652074; PMID:10873841; PMID:16806745; TTA-Leu codon(s) 962 may indicate regulation by BldA.
  
  
 0.407
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.