Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG71780.1Putative membrane protein. (67 aa)    
Predicted Functional Partners:
CBG71779.1
Putative MarR family transcriptional regulator.
       0.755
CBG71777.1
Conserved hypothetical protein; Belongs to the UPF0312 family.
       0.629
CBG71776.1
Putative ATP binding protein.
       0.607
CBG70030.1
Putative SpdD-like protein; PMID: 9620953.
      
 0.447
CBG71629.1
Putative serine/threonine protein kinase.
      
 0.447
CBG73686.1
Putative lipoprotein.
      
 0.447
SCAB_6721
Putative membrane protein.
      
 0.447
CBG74550.1
Putative membrane protein.
      
 0.447
CBG71025.1
Putative major facilitator exporter; PMID:10658661; PMID: 9933932; PMID:15313224; Belongs to the major facilitator superfamily.
       0.439
CBG71778.1
Putative integral membrane transport protein.
     
 0.405
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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