Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBG71786.1Conserved hypothetical protein. (174 aa)    
Predicted Functional Partners:
tadA
Putative deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.844
CBG71159.1
Conserved hypothetical protein; PMID: 15793135.
  
     0.758
CBG71783.1
Conserved hypothetical protein.
 
     0.700
CBG71787.1
Hypothetical protein.
       0.699
CBG71784.1
Putative secreted protein.
       0.688
CBG71782.1
SigF-like sigma factor; PMID: 7476207; PMID:14597396; Belongs to the sigma-70 factor family.
 
     0.670
CBG72666.1
Putative SsgA-like regulator; PMID:9141673.
  
     0.657
CBG70205.1
Conserved hypothetical protein.
  
     0.649
CBG74087.1
Conserved hypothetical protein.
  
     0.631
CBG70752.1
Putative membrane protein.
  
     0.609
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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