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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71818.1Conserved hypothetical protein; PMID: 8458843; PMID: 9748440. (856 aa)    
Predicted Functional Partners:
ramB
Putative ABC transporter.
 
  
 0.811
SCAB_3651
Putative ABC transporter.
 
  
 0.808
ramA
Putative ABC transporter.
 
  
 0.798
SCAB_3641
Putative ABC transporter.
 
  
 0.790
CBG71819.1
Hypothetical protein; TTA-Leu codon(s) 70 may indicate regulation by BldA.
       0.752
CBG71820.1
Hypothetical protein.
       0.716
afsR
Regulatory protein; PMID:10517581; PMID:15921897; PMID: 2253887.
  
 
 
 0.548
CBG71817.1
Putative integral membrane protein.
       0.523
CBG74908.1
Putative xylanase A.
  
     0.502
CBG75926.1
Putative secreted protein; Cluster 0630 with SCAB33981.
  
    0.501
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.