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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71829.1Putative two component sensor kinase. (442 aa)    
Predicted Functional Partners:
CBG71828.1
Putative two component system response regulator.
 
 0.984
CBG73327.1
Putative two-component system response regulator; PMID:2583128; PMID:7476861; PMID:10206788.
 
 0.935
CBG70232.1
Putative two-component system response regulator; PMID: 9831526; PMID: 10206788.
 
 0.934
CBG73558.1
Putative two-component system response regulator.
 
 0.932
SCAB_1661
Putative luxR family regulator; PMID:7868594; PMID:10206788; TTA-Leu codon(s) 16 may indicate regulation by BldA.
  
  0.927
CBG71830.1
Putative ABC-transporter transmembrane subunit.
 
  
 0.919
SCAB_40191
Putative ABC transporter integral membrane subunit; HMMPfam hit to PF02687, Predicted permease, score 3.4e-13.
 
  0.913
CBG71831.1
Putative ABC transport protein ATP-binding subunit.
 
  
 0.790
CBG69886.1
Putative two-component system sensor kinase; PMID: 16272382; like SCAB8941.
  
     0.674
SCAB_8941
Putative two component system sensor kinase; PMID: 16272382; like SCAB27851.
  
     0.641
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.