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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_4791Conserved hypothetical protein. (231 aa)    
Predicted Functional Partners:
CBG68821.1
Putative respiratory chain oxidoreductase; TTA-Leu codon(s) 59 may indicate regulation by BldA.
  
 
 0.546
CBG71680.1
Putative LysR-family transcriptional regulator; TTA-Leu codon(s) 5, 89 may indicate regulation by BldA; Belongs to the LysR transcriptional regulatory family.
       0.542
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
 
 0.521
SCAB_4781
Conserved hypothetical protein.
       0.433
SCAB_4771
Putative integral membrane protein; No significant db matches; TTA-Leu codon(s) 13 may indicate regulation by BldA.
       0.425
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
   0.409
CBG70998.1
Putative acetoin utilization protein.
   
  0.401
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.