Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71866.1Conserved hypothetical protein. (1251 aa)    
Predicted Functional Partners:
CBG71863.1
Hypothetical protein.
       0.795
CBG71865.1
Hypothetical protein.
       0.782
CBG71862.1
Hypothetical protein.
       0.773
CBG71864.1
Hypothetical protein.
       0.773
CBG73514.1
Putative secreted protein.
   
 
 0.739
CBG71877.1
Putative phage protein.
 
  
 0.646
CBG71861.1
Conserved hypothetical protein.
       0.584
CBG71869.1
Conserved hypothetical protein.
       0.575
CBG71868.1
Hypothetical protein.
       0.560
CBG71867.1
Hypothetical protein.
       0.553
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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