Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBG71938.1Putative oxidoreductase. (294 aa)    
Predicted Functional Partners:
CBG71937.1
Putative oxidoreductase.
  
 
 0.673
CBG71939.1
Putative secreted protein.
  
  
 0.632
CBG74925.1
Putative polyketide synthase.
  
 
 0.605
CBG75341.1
Putative type I polyketide synthase.
  
 
 0.605
CBG71940.1
Putative monooxygenase.
  
    0.577
CBG71935.1
Putative dehydrogenase/reductase.
  
 
 0.574
CBG71934.1
Putative aldo/keto reductase.
 
 
0.564
CBG71936.1
Conserved hypothetical protein.
  
    0.549
metH
Putative methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 0.546
CBG75886.1
Putative oxidoreductase.
  
 
 0.530
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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