Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SCAB_4911Conserved hypothetical protein. (285 aa)    
Predicted Functional Partners:
SCAB_4921
Putative serine/threonine protein kinase.
       0.874
CBG74925.1
Putative polyketide synthase.
   
 0.843
CBG75341.1
Putative type I polyketide synthase.
   
 0.843
CBG69035.1
Conserved hypothetical protein.
   
 0.759
CBG69237.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB65921.
   
 0.701
CBG73592.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB21231.
   
 0.701
CBG68670.1
Putative dioxygenanse; PMID:1937018; nearest matches eukaryotic proteins.
    
 
 0.697
CBG69749.1
Putative heat shock protein (hsp90-family).
    
 0.691
CBG70998.1
Putative acetoin utilization protein.
   
 
 0.658
CBG70604.1
Putative leucine-rich repeat protein; TTA-Leu codon(s) 58 may indicate regulation by BldA.
    
 0.623
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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