Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71970.1Conserved hypothetical protein. (129 aa)    
Predicted Functional Partners:
CBG71969.1
Putative acetyltransferase.
  
    0.657
SCAB_4881
Putative membrane protein.
  
     0.630
CBG72273.1
Putative integral membrane protein.
  
     0.536
SCAB_7621
Conserved hypothetical protein.
  
     0.528
CBG72272.1
Putative transcriptional regulator; TTA-Leu codon(s) 353 may indicate regulation by BldA.
  
    0.496
abaA
Conserved hypothetical protein.
  
    0.476
CBG69568.1
Conserved hypothetical protein.
  
     0.472
SCAB_5111
Putative secreted protein.
  
     0.443
CBG74548.1
Putative secreted protein.
  
     0.434
SCAB_7741
Putative membrane protein.
  
     0.430
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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