Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBG71973.1Putative membrane protein. (519 aa)    
Predicted Functional Partners:
CBG71974.1
Putative integral membrane protein.
 
     0.970
CBG71972.1
Putative ATP/GTP-binding protein; Cluster 0209 with SCAB22251 and SCAB32831.
 
     0.947
CBG71971.1
Putative membrane protein.
 
     0.895
CBG71975.1
Putative membrane protein.
       0.874
CBG71604.1
Conserved hypothetical protein.
  
     0.772
CBG72219.1
Putative DNA-binding protein.
  
     0.769
CBG69731.1
Conserved hypothetical protein; Cluster 0582 with SCAB84991.
  
     0.767
CBG71601.1
Putative membrane protein.
  
     0.766
CBG70135.1
Conserved hypothetical protein; Cluster 0623 with SCAB65421.
  
     0.763
CBG75446.1
Conserved hypothetical protein; Cluster 0582 with SCAB26271.
  
     0.760
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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