Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG71974.1Putative integral membrane protein. (439 aa)    
Predicted Functional Partners:
CBG71973.1
Putative membrane protein.
 
     0.970
CBG71972.1
Putative ATP/GTP-binding protein; Cluster 0209 with SCAB22251 and SCAB32831.
 
     0.947
CBG71971.1
Putative membrane protein.
 
     0.922
CBG71975.1
Putative membrane protein.
       0.874
CBG69338.1
Putative lipoprotein.
 
     0.769
CBG70380.1
Putative membrane protein.
 
     0.769
CBG71604.1
Conserved hypothetical protein.
  
     0.769
CBG71601.1
Putative membrane protein.
  
     0.760
CBG69949.1
Putative large Ala/Glu-rich protein.
  
    0.755
CBG71550.1
Conserved hypothetical protein.
 
   
 0.755
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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