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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_4941Conserved hypothetical protein; PMID:2575701; PMID:11567009; PMID:11451671. (195 aa)    
Predicted Functional Partners:
CBG72520.1
Conserved hypothetical protein.
 
     0.673
CBG70249.1
Conserved hypothetical protein; PMID: 16208464.
 
     0.545
ectA
Putative L-2,4-diaminobutyric acid acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A.
       0.542
CBG74069.1
Putative aminotransferase.
       0.542
CBG74073.1
Conserved hypothetical protein.
       0.542
ectD
Putative ectoine hydroxylase; Compatible solute ectoine: osmoprotectant.
       0.533
CBG74070.1
Putative secreted solute-binding protein.
       0.508
SCAB_4931
Putative secretd protein.
       0.486
SCAB_5781
Conserved hypothetical protein.
 
     0.485
CBG74677.1
Conserved hypothetical protein.
 
     0.485
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.