Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBG72008.1Conserved hypothetical protein. (200 aa)    
Predicted Functional Partners:
CBG72009.1
Putative sulphur transfer protein.
       0.759
CBG72010.1
Putative integral membrane protein.
       0.759
glnR
Putative transcriptional regulatory protein.
       0.660
CBG72011.1
Putative secreted protein.
       0.651
CBG72005.1
Putative binding protein.
       0.628
CBG72004.1
Putative protease.
  
    0.605
CBG72001.1
Putative two-component system sensor kinase.
  
    0.593
CBG72002.1
Putative two-component systen response regulator.
       0.581
CBG72007.1
Hypothetical protein.
       0.570
CBG74220.1
Conserved hypothetical protein.
 
    0.555
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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