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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG72016.1Conserved hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands. (191 aa)    
Predicted Functional Partners:
CBG72018.1
Conserved hypothetical protein; Belongs to the GcvT family.
 
    0.917
CBG72017.1
Putative metal-ion-uptake regulator; Belongs to the Fur family.
       0.850
CBG72015.1
Conserved hypothetical protein.
       0.743
CBG71809.1
Putative SAM dependent methyltransferase.
  
  
 0.631
CBG72214.1
Putative SAM-dependent methyltransferase.
  
  
 0.631
rsmA
Putative SAM-binding methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.631
CBG72082.1
Conserved hypothetical protein.
 
     0.620
CBG72014.1
Putative membrane protein.
  
 
 0.481
CBG71637.1
Conserved hypothetical protein.
  
     0.473
CBG73785.1
Putative membrane protein.
  
     0.461
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.