Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SCAB_4971Conserved hypothetical protein. (119 aa)    
Predicted Functional Partners:
CBG71388.1
Putative MerR-family regulator.
  
  
 0.540
SCAB_4961
Putative secreted protein; PMID:14762003.
       0.486
CBG71952.1
Putative reductase; PMID:8387146; PMID:11985710.
     
 0.429
CBG74925.1
Putative polyketide synthase.
  
 
 0.425
CBG75341.1
Putative type I polyketide synthase.
  
 
 0.425
CBG71380.1
Conserved hypothetical protein.
   
 0.409
SCAB_4911
Conserved hypothetical protein.
   
 0.409
CBG73646.1
Putative membrane protein.
   
 0.409
CBG75508.1
Putative membrane protein.
   
 0.409
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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