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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_5001Conserved hypothetical protein; PMID:16208464. (354 aa)    
Predicted Functional Partners:
SCAB_4991
Putative polyprenyl synthatase; PMID: 12761202; Belongs to the FPP/GGPP synthase family.
   
   0.875
CBG70524.1
Putative regulatory protein; PMID: 10517581; PMID: 15921897.
 
   
 0.802
CBG69125.1
Putative phosphotransferase.
  
   0.775
CBG71048.1
Putative secreted protein.
 
    0.766
SCAB_7681
Conserved hypothetical protein.
  
     0.766
CBG72187.1
Putative lipoprotein.
 
     0.759
CBG70705.1
Conserved hypothetical protein.
 
   0.758
CBG71962.1
Conserved hypothetical protein.
  
    0.758
CBG71744.1
Putative mobile element transfer protein; PMID: 9620953.
  
     0.757
CBG73450.1
4.1.7.
  
     0.740
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.