Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
CBG72112.1Putative membrane protein. (343 aa)    
Predicted Functional Partners:
CBG74925.1
Putative polyketide synthase.
  
 0.854
CBG75341.1
Putative type I polyketide synthase.
  
 0.854
CBG69237.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB65921.
  
 0.694
CBG73592.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB21231.
  
 0.694
CBG75342.1
Putative type I polyketide synthase.
  
 0.648
CBG74926.1
Putative polyketide synthase; PMID:16207901; PMID:11358695; PMID:9860992; PMID:14736915; many more matches.
  
 0.614
CBG75340.1
Putative type I polyketide synthase.
  
 0.614
CBG70998.1
Putative acetoin utilization protein.
   
 0.601
CBG72113.1
Putative small integral membrane protein.
       0.576
CBG70604.1
Putative leucine-rich repeat protein; TTA-Leu codon(s) 58 may indicate regulation by BldA.
  
 0.572
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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