Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG72119.1Conserved hypothetical protein. (152 aa)    
Predicted Functional Partners:
CBG71376.1
Putative integral membrane protein.
  
     0.558
CBG72120.1
Putative ATP-binding protein; IstB-like domain often associated with IS; 3 TMHs suggest membrane location; TTA-Leu codon(s) 57 may indicate regulation by BldA.
       0.536
CBG69033.1
Putative hydrolase.
  
     0.434
CBG75795.1
Conserved hypothetical protein; PMID:9387157.
  
     0.409
CBG71312.1
Conserved hypothetical protein.
  
     0.403
CBG72118.1
Putative DNA helicase.
       0.403
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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