STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG72157.1Putative secreted protein; Conservon. (725 aa)    
Predicted Functional Partners:
CBG72155.1
Conserved hypothetical protein; PMID:12657469; conservon.
 
 
 0.972
CBG72156.1
Conserved hypothetical protein; Conservon.
 
     0.969
CBG69622.1
Putative sensory histidine kinase.
  
 
 0.932
SCAB_0821
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
  
 
 0.899
CBG72154.1
Putative P450-like monooxygenase; PMID:12657469; conservon; Belongs to the cytochrome P450 family.
 
   0.895
CBG69775.1
RarC (conservon) homolog; PMID: 12657469; cluster 0585 with SCAB26761; truncated conservon.
 
 
 0.800
CBG69779.1
RarC (conservon) homolog; PMID: 12657469; cluster 0585 with SCAB26711; truncated conservon.
 
 
 0.799
CBG74846.1
RarC (conservon) homologue; PMID: 12657469; truncated conservon.
 
 
 0.797
CBG70072.1
Conserved hypothetical protein; PMID: 12657469; related to conservon.
 
 
 0.795
CBG74587.1
RarC (conservon) homolog; PMID: 12657469; truncated conservon.
 
 
 0.791
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.