Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG72263.1Conserved hypothetical protein. (69 aa)    
Predicted Functional Partners:
CBG72264.1
Putative chitinase-promoter-binding protein.
 
   
 0.823
CBG72267.1
Putative integral membrane protein.
 
   
 0.766
CBG72265.1
Conserved hypothetical protein.
     
 0.668
CBG75441.1
Conserved hypothetical protein.
  
     0.628
CBG74790.1
Conserved hypothetical protein.
  
     0.619
CBG72266.1
Putative D-alanyl-D-alanine carboxypeptidase; PMID: 9696752; Belongs to the peptidase S11 family.
 
   
 0.588
CBG72260.1
Putative sodium-coupled transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     
 0.584
bldB
Bldb; Putative regulator, BldB.
  
     0.564
CBG72278.1
Conserved hypothetical protein; PMID:11347268.
 
     0.544
CBG73589.1
Conserved hypothetical protein.
 
     0.528
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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