Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_5261Putative secreted solute-binding protein. (517 aa)    
Predicted Functional Partners:
SCAB_5241
Putative transport system integral membrane protein.
 
 
 0.933
SCAB_5251
Putative metal transport integral membrane protein.
 
 
 0.928
SCAB_8731
Putative transport system permease protein.
 
 
 0.925
SCAB_6811
Putative integral membrane transport protein.
 
 
 0.918
SCAB_3761
Putative oligopeptide transport system (integral membrane and ATP-binding proteins).
 
 
 0.879
SCAB_5231
Putative nucleotide-binding ABC transporter subunit.
 
 
 0.873
CBG75144.1
Putative transport system integral membrane protein.
 
 
 0.847
CBG75592.1
Putative oligopeptide transport system (integral membrane and ATP-binding proteins); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.843
CBG75145.1
Putative oligopeptide ABC transporter integral membrane protein.
 
 
 0.836
CBG68570.1
ABC transporter permease protein.
 
 
 0.795
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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