Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_5271Putative oxygenase (putative secreted protein). (329 aa)    
Predicted Functional Partners:
SCAB_5281
Putative ornithine cyclodeaminase.
 
    0.946
SCAB_5291
Putative lysine/ornithine decarboxylase.
 
     0.869
SCAB_5301
Putative cystathionine beta-synthase.
 
   
 0.864
norM
Multidrug resistance protein.
 
     0.853
CBG70323.1
Conserved secondary metabolite protein; PMID: 12642677; PMID: 16506694; PMID: 15303497.
  
     0.598
CBG69286.1
Putative secondary metabolite protein; PMID: 12642677; PMID: 16506694; PMID: 15827636.
  
     0.560
SCAB_5261
Putative secreted solute-binding protein.
 
     0.555
CBG70324.1
Conserved secondary metabolite protein; PMID: 16506694; PMID: 12642677.
  
     0.530
SCAB_1361
Conserved hypothetical protein (fragment); PMID:15328113; PMID:16208464.
 
  
 0.523
CBG70322.1
Putative membrane protein; PMID:15313224; PMID:15303497; PMID: 16506694; PMID:16305230.
  
     0.507
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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