STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG72315.1Putative integral membrane protein. (271 aa)    
Predicted Functional Partners:
CBG72316.1
Putative ABC transport system, transmembrane component.
 
  
 0.977
CBG72314.1
Putative ABC transporter ATP-binding subunit; PMID:15155910.
 
  
 0.964
CBG72709.1
Putative ABC transporter ATP-binding subunit.
 
  
 0.849
CBG72708.1
Putative ABC transporter transmembrane subunit.
 
  
 0.846
CBG69065.1
Putative maltose-binding protein.
 
     0.647
CBG69066.1
Putative integral membrane transport protein.
 
     0.610
CBG69067.1
Putative binding protein dependent transport protein.
 
     0.590
CBG69163.1
Putative integral membrane protein.
 
     0.541
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.