Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_5281Putative ornithine cyclodeaminase. (340 aa)    
Predicted Functional Partners:
SCAB_5271
Putative oxygenase (putative secreted protein).
 
    0.946
SCAB_5291
Putative lysine/ornithine decarboxylase.
 
  
 0.929
SCAB_5301
Putative cystathionine beta-synthase.
 
  
 0.900
norM
Multidrug resistance protein.
 
     0.895
SCAB_5261
Putative secreted solute-binding protein.
 
     0.556
CBG70426.1
Conserved hypothetical protein.
  
     0.494
SCAB_5241
Putative transport system integral membrane protein.
 
    0.456
CBG75640.1
Putative hydrogenase maturation protein.
      
 0.454
SCAB_5231
Putative nucleotide-binding ABC transporter subunit.
 
     0.419
CBG70959.1
Conserved hypothetical protein.
  
     0.416
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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