Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBG72319.1Putative secreted protein. (452 aa)    
Predicted Functional Partners:
CBG69622.1
Putative sensory histidine kinase.
  
  
 0.937
CBG71048.1
Putative secreted protein.
 
     0.758
CBG73171.1
Putative sensor kinase.
  
  
 0.749
CBG71550.1
Conserved hypothetical protein.
  
     0.740
SCAB_7681
Conserved hypothetical protein.
  
     0.737
CBG68533.1
Putative membrane protein.
  
    0.736
CBG75728.1
Conserved hypothetical protein.
  
     0.728
CBG72427.1
Putative membrane protein; Possibly subunit of ATP transporter system.
  
     0.724
CBG72428.1
Putative membrane protein; Possibly subunit of ATP transporter system.
  
 
 0.722
CBG72320.1
Putative transcriptional regulator; PMID:15752735.
       0.719
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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