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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_5331Putative ATP-binding component of ABC transporter. (278 aa)    
Predicted Functional Partners:
SCAB_5351
Putative substrate-binding component of ABC transporter.
 
 0.996
SCAB_5341
Putative sugar transport integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 0.995
SCAB_5321
Putative LacI-family transcriptional regulator.
  
    0.797
CBG68486.1
Putative D-ribose-binding protein precursor.
 
 
 0.697
CBG74312.1
Putative ribose transporter transmembrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.694
CBG74874.1
Putative ABC transport system transmembrane component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.694
CBG68485.1
Putative sugar ABC transport system, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.686
CBG69027.1
Probable ABC transport protein, membrane component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.675
CBG69215.1
Probable ABC-type integral membrane transport protein; Cluster 0482 with SCAB43221; Belongs to the binding-protein-dependent transport system permease family.
  
 0.651
SCAB_9421
Putative ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.650
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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