Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
CBG72403.1Putative DNA-binding protein. (90 aa)    
Predicted Functional Partners:
CBG72402.1
Putative phage integrase; Belongs to the 'phage' integrase family.
 
   
 0.847
CBG72406.1
Conserved hypothetical protein.
       0.721
CBG70029.1
Putative replication initiation protein; PMID: 9620953; PMID: 8029324; PMID: 9851040.
 
   
 0.705
CBG72404.1
Putative NTP-binding protein.
       0.701
CBG72405.1
Hypothetical protein.
       0.693
CBG69228.1
Putative phage integrase; PMID:15574907; Belongs to the 'phage' integrase family.
 
   
 0.534
CBG72407.1
Hypothetical protein.
       0.494
CBG72408.1
Putative integral membrane protein.
       0.487
CBG75673.1
CONSERVED HYPOTHETICAL PROTEIN.
  
     0.403
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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