Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG72409.1Putative plasmid protein; PMID:16439019. (704 aa)    
Predicted Functional Partners:
CBG72406.1
Conserved hypothetical protein.
 
     0.679
CBG72650.1
Xis-like protein; PMID:8159169; PMID:2180909.
  
   
 0.620
CBG72411.1
Conserved hypothetical protein.
       0.576
CBG72651.1
Putative integrase; PMID:2180909; Belongs to the 'phage' integrase family.
 
   
 0.573
CBG72412.1
Putative secreted protein; PMID:3170481.
       0.544
CBG72413.1
Putative plasmid gene; PMID:7582009; PMID:8234485.
       0.544
CBG72414.1
Conserved hypothetical protein.
       0.544
CBG72410.1
Hypothetical protein.
       0.542
CBG72306.1
Conserved hypothetical protein; PMID:2180909; cluster 0723 with SCAB48621; C terminal half of protein match with Saccharopolyspora erythraea hypothetical protein near xis excision nuclease.
 
     0.530
CBG71915.1
Conserved hypothetical protein; PMID:2180909; cluster 0723 with SCAB52701; C terminal half of protein match with Saccharopolyspora erythraea hypothetical protein near xis excision nuclease.
 
     0.522
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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