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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtB-1Putative phytoene synthase; PMID:8917308; PMID:15716454; carotenoid pigment gene cluster. (304 aa)    
Predicted Functional Partners:
crtI
Putative phytoene dehydrogenase (phytoene desaturase) (putative secreted protein); PMID:8917308; PMID:15716454; carotenoid pigment gene cluster.
 
 
 0.999
crtE
Putative geranylgeranyl pyrophosphate synthase; PMID:8917308; PMID:15716454; carotenoid pigment gene cluster; Belongs to the FPP/GGPP synthase family.
  
 0.989
CBG75559.1
Conserved hypothetical protein.
  
  
  0.963
CBG70866.1
Putative polyprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.940
hopD
Putative squalene/phytoene synthase.
  
  
 
0.926
crtV
Putative iron-sulfur protein; PMID:10767533; PMID:11200234; PMID:15716454; carotenoid pigment gene cluster.
   
 0.926
crtY
Putative lycopene cyclase; PMID:8917308; PMID:15716454; carotenoid pigment gene cluster.
 
  
 0.922
SCAB_4991
Putative polyprenyl synthatase; PMID: 12761202; Belongs to the FPP/GGPP synthase family.
  
 0.905
hopB
Putative polyprenyl synthatase; PMID: 12761202; Belongs to the FPP/GGPP synthase family.
  
 0.884
CBG70108.1
Putative polyprenyl diphosphate synthase; PMID: 9466266; Belongs to the FPP/GGPP synthase family.
  
 0.884
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.