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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG72485.1Conserved hypothetical protein. (76 aa)    
Predicted Functional Partners:
CBG72486.1
Conserved hypothetical protein.
       0.774
CBG69738.1
Conserved hypothetical protein.
  
     0.770
CBG72471.1
Putative lipoprotein.
  
     0.751
mreD
Rod shape-determining protein; PMID:1400225.
  
     0.742
CBG70205.1
Conserved hypothetical protein.
  
     0.731
SCAB_8781
Conserved hypothetical protein; PMID:12107139; PMID:10627032; Belongs to the anti-sigma-factor antagonist family.
  
     0.711
CBG73756.1
Putative membrane protein.
  
     0.692
CBG70997.1
Conserved hypothetical protein.
  
     0.684
CBG71632.1
Putative membrane protein.
  
     0.659
prs
Anti-sigma factor; PMID: 14597396; PMID: 10913862.
  
     0.656
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.