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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtEPutative geranylgeranyl pyrophosphate synthase; PMID:8917308; PMID:15716454; carotenoid pigment gene cluster; Belongs to the FPP/GGPP synthase family. (452 aa)    
Predicted Functional Partners:
crtB-1
Putative phytoene synthase; PMID:8917308; PMID:15716454; carotenoid pigment gene cluster.
  
 0.989
uppS
Undecaprenyl phosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.984
idi
Putative IPP isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
 
 0.979
uppS1
Putative undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.975
crtI
Putative phytoene dehydrogenase (phytoene desaturase) (putative secreted protein); PMID:8917308; PMID:15716454; carotenoid pigment gene cluster.
 
  
 0.964
ispH
Putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
 
 0.957
CBG70866.1
Putative polyprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
0.927
SCAB_4991
Putative polyprenyl synthatase; PMID: 12761202; Belongs to the FPP/GGPP synthase family.
  
  
 
0.919
hopB
Putative polyprenyl synthatase; PMID: 12761202; Belongs to the FPP/GGPP synthase family.
  
  
0.918
CBG70108.1
Putative polyprenyl diphosphate synthase; PMID: 9466266; Belongs to the FPP/GGPP synthase family.
  
  
0.918
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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