Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG72499.1Conserved hypothetical protein. (132 aa)    
Predicted Functional Partners:
CBG72498.1
Conserved hypothetical protein.
 
     0.943
CBG72497.1
Conserved hypothetical protein.
 
     0.937
CBG69622.1
Putative sensory histidine kinase.
  
 
 0.830
CBG73171.1
Putative sensor kinase.
  
 
 0.775
CBG68690.1
Putative alpha-mannosidase.
  
    0.772
CBG72496.1
Conserved hypothetical protein; Cluster 0757 with SCAB5811.
 
   
0.759
CBG75927.1
Putative two-component sensor kinase.
   
 
 0.726
CBG72500.1
Putative decarboxylase; PMID:16208464.
       0.697
SCAB_0821
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
   
 
 0.663
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.650
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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