Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBG72506.1SigL-like sigma factor; PMID:14597396; PMID:9115095; PMID:10071227; PMID:9826694; PMID:15292136; PMID:7770044; PMID:10517579; Belongs to the sigma-70 factor family. (304 aa)    
Predicted Functional Partners:
prs
Anti-sigma factor; PMID: 14597396; PMID: 10913862.
 
   0.889
CBG72507.1
Putative anti sigma factor antagonist; PMID:6088674; PMID:15793135; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.878
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.765
CBG74876.1
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
 
 
 0.755
rpoC
DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.735
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.730
CBG69622.1
Putative sensory histidine kinase.
  
  
 0.720
CBG72505.1
Conserved hypothetical protein.
       0.719
SCAB_8891
Hypothetical protein.
 
 
 0.684
CBG72508.1
Putative regulator of Sig15.
  
 
 0.681
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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