Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG72539.1Integral membrane protein; PMID: 9565673; PMID:1316997; glucose induced PMID:9565673. (1210 aa)    
Predicted Functional Partners:
CBG72540.1
Putative secreted protein.
 
     0.967
whiB
Sporulation regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
 
     0.760
CBG69447.1
Putative membrane-located undecaprenyl-phosphate transferase; PMID:12644223; PMID:12825356.
  
  
 0.721
CBG72933.1
Putative sugar transferase.
  
  
 0.721
CBG72471.1
Putative lipoprotein.
  
     0.659
CBG73756.1
Putative membrane protein.
  
     0.628
CBG72485.1
Conserved hypothetical protein.
  
     0.620
CBG74441.1
Putative membrane protein.
  
     0.571
lpqB
Putative lipoprotein.
  
     0.564
CBG74378.1
Conserved hypothetical protein; First cds in the str/sts cluster sequence.
  
    0.555
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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