Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG72545.1Conserved hypothetical protein. (375 aa)    
Predicted Functional Partners:
manB
Phosphomannomutase.
  
 
 0.827
manA
Mannose-6-phosphate isomerase.
       0.786
CBG72544.1
Conserved hypothetical protein; Belongs to the UPF0434 family.
       0.757
CBG72547.1
Putative cation efflux transporter.
       0.681
CBG69828.1
Conserved hypothetical protein.
 
    0.625
sahH
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
       0.614
CBG72542.1
Conserved hypothetical protein.
       0.612
CBG71193.1
Putative secreted protein.
  
     0.592
CBG74073.1
Conserved hypothetical protein.
  
     0.579
CBG71199.1
Putative integral membrane protein.
  
     0.543
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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