Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG72658.1Conserved hypothetical protein. (213 aa)    
Predicted Functional Partners:
CBG74349.1
Urea carboxylase.
  
    0.795
CBG74573.1
Conserved hypothetical protein.
  
    0.788
CBG72657.1
Hypothetical protein.
       0.773
CBG72656.1
Conserved hypothetical protein.
       0.725
CBG72655.1
Putative prophage maintenance system killer protein; PMID: 8411153.
       0.651
CBG72653.1
Putative multidrug efflux transporter; PMID:12937892.
       0.633
CBG68706.1
Putative transcriptional regulator.
  
     0.617
SCAB_9561
Putative transcriptional regulator.
  
     0.597
CBG75735.1
Putative transcriptional regulator.
  
     0.592
SCAB_7041
PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN.
  
     0.588
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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