Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG72660.1Conserved hypothetical protein. (158 aa)    
Predicted Functional Partners:
CBG72659.1
Putative hydrolase.
 
     0.927
CBG70436.1
Conserved hypothetical protein; Cluster 0627 with SCAB56171.
  
     0.599
CBG72644.1
Conserved hypothetical protein; Cluster 0627 with SCAB33391.
  
     0.575
CBG72897.1
Putative DNA-binding protein.
  
 
   0.525
CBG72661.1
Putative secreted protein.
       0.513
SCAB_5731
Conserved hypothetical protein.
  
     0.513
SCAB_3131
Conserved hypothetical protein.
  
     0.465
CBG68759.1
Putative transcriptional regulatory protein.
  
 
   0.455
CBG71498.1
Conserved hypothetical protein.
  
     0.448
SCAB_7841
Conserved hypothetical protein.
  
     0.421
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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