Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBG72747.1Conserved hypothetical protein; Belongs to the UPF0303 family. (163 aa)    
Predicted Functional Partners:
CBG72748.1
Putative oxidoreductase.
 
    0.901
CBG72749.1
Putative sugar kinase; Product annotation from ROK pfam PF00480; lacks PF08067 Nterm DNA-binding domain.
       0.777
CBG72750.1
Putative membrane protein.
       0.660
CBG72751.1
Putative NagD-like phosphatase; PMID: 16430214; Belongs to the HAD-like hydrolase superfamily.
       0.613
CBG73601.1
Conserved hypothetical protein.
       0.526
CBG69054.1
Putative regulatory protein.
  
     0.401
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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