STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG73880.1Conserved hypothetical protein. (242 aa)    
Predicted Functional Partners:
CBG74181.1
Putative nucleotide-sugar hydrolase; PMID:2506427.
 
     0.602
SCAB_68841
Putative insertion sequence; PMID:16208464; cluster 0034: SCAB14601, SCAB16631, SCAB24421, SCAB30531, SCAB30841, SCAB68821, SCAB87301; pseudo: frameshift after codon 113; cluster 0050 6: SCAB16641, SCAB24431, SCAB30541, SCAB30831, SCAB68821, SCAB87291; Belongs to the 5'-nucleotidase family.
       0.585
pyk1
Putative pyruvate kinase; Cluster 0606 with SCAB28241; Belongs to the pyruvate kinase family.
       0.524
CBG69323.1
Putative MarR family transcriptional regulator; Cluster 0514 with SCAB32661.
  
     0.486
CBG69381.1
Hypothetical protein.
  
     0.438
gltB
Putative Ferredoxin-dependent glutamate synthase 1; PMID:7727752.
     
 0.435
CBG70366.1
Putative MarR family transcriptional regulator; Cluster 0514 with SCAB22081.
  
     0.426
CBG69380.1
Conserved hypothetical protein; TTA-Leu codon(s) 92 may indicate regulation by BldA.
  
     0.423
CBG69246.1
Putative regulator protein.
  
     0.420
CBG70322.1
Putative membrane protein; PMID:15313224; PMID:15303497; PMID: 16506694; PMID:16305230.
  
     0.417
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.