STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001420915_01859Unannotated protein. (364 aa)    
Predicted Functional Partners:
GCA_001420915_02238
Unannotated protein.
   
 0.874
GCA_001420915_01318
Unannotated protein.
  
 
 0.848
GCA_001420915_02141
Unannotated protein.
   
 0.808
GCA_001420915_04300
Unannotated protein.
  
 
 0.796
GCA_001420915_01858
Unannotated protein.
 
    
0.609
GCA_001420915_03351
Unannotated protein.
  
 0.604
GCA_001420915_01788
Unannotated protein.
 
 
   0.592
GCA_001420915_00177
Unannotated protein.
  
 
 
 0.580
GCA_001420915_00176
Unannotated protein.
  
 
 
 0.577
GCA_001420915_01854
Unannotated protein.
   
   0.565
Your Current Organism:
Agarivorans gilvus
NCBI taxonomy Id: 680279
Other names: A. gilvus, Agarivorans gilvus Du et al. 2011, Agarivorans sp. WH0801, CGMCC 1.10131, NRRL B-59247, strain WH0801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.