STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001420915_04015Unannotated protein. (218 aa)    
Predicted Functional Partners:
GCA_001420915_00782
Unannotated protein.
  
  
 0.976
GCA_001420915_01769
Unannotated protein.
  
 
 0.854
GCA_001420915_03139
Unannotated protein.
  
 
 0.854
GCA_001420915_00778
Unannotated protein.
  
  
 0.797
GCA_001420915_00781
Unannotated protein.
  
  
 0.782
GCA_001420915_00779
Unannotated protein.
  
  
 0.743
GCA_001420915_00780
Unannotated protein.
  
  
 0.697
GCA_001420915_01366
Unannotated protein.
    
 0.686
GCA_001420915_00673
Unannotated protein.
    
 0.634
GCA_001420915_01110
Unannotated protein.
  
 
 0.623
Your Current Organism:
Agarivorans gilvus
NCBI taxonomy Id: 680279
Other names: A. gilvus, Agarivorans gilvus Du et al. 2011, Agarivorans sp. WH0801, CGMCC 1.10131, NRRL B-59247, strain WH0801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.