Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001553435_01621 | GCA_001553435_07267 | GCA_001553435_01621 | GCA_001553435_07267 | Unannotated protein. | Unannotated protein. | 0.883 |
GCA_001553435_01621 | ddl | GCA_001553435_01621 | GCA_001553435_05233 | Unannotated protein. | Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.865 |
GCA_001553435_01621 | ftsQ | GCA_001553435_01621 | GCA_001553435_05585 | Unannotated protein. | Unannotated protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.897 |
GCA_001553435_01621 | mraY | GCA_001553435_01621 | GCA_001553435_05582 | Unannotated protein. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.834 |
GCA_001553435_01621 | murB | GCA_001553435_01621 | GCA_001553435_03830 | Unannotated protein. | Unannotated protein; Cell wall formation. | 0.651 |
GCA_001553435_01621 | murC | GCA_001553435_01621 | GCA_001553435_02001 | Unannotated protein. | Unannotated protein; Cell wall formation; Belongs to the MurCDEF family. | 0.937 |
GCA_001553435_01621 | murD | GCA_001553435_01621 | GCA_001553435_05583 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.760 |
GCA_001553435_01621 | murE | GCA_001553435_01621 | GCA_001553435_05580 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.809 |
GCA_001553435_01621 | murF | GCA_001553435_01621 | GCA_001553435_05581 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.951 |
GCA_001553435_01621 | murG | GCA_001553435_01621 | GCA_001553435_05584 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.883 |
GCA_001553435_07267 | GCA_001553435_01621 | GCA_001553435_07267 | GCA_001553435_01621 | Unannotated protein. | Unannotated protein. | 0.883 |
GCA_001553435_07267 | ddl | GCA_001553435_07267 | GCA_001553435_05233 | Unannotated protein. | Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.893 |
GCA_001553435_07267 | ftsQ | GCA_001553435_07267 | GCA_001553435_05585 | Unannotated protein. | Unannotated protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.927 |
GCA_001553435_07267 | mraY | GCA_001553435_07267 | GCA_001553435_05582 | Unannotated protein. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.989 |
GCA_001553435_07267 | murB | GCA_001553435_07267 | GCA_001553435_03830 | Unannotated protein. | Unannotated protein; Cell wall formation. | 0.701 |
GCA_001553435_07267 | murC | GCA_001553435_07267 | GCA_001553435_02001 | Unannotated protein. | Unannotated protein; Cell wall formation; Belongs to the MurCDEF family. | 0.951 |
GCA_001553435_07267 | murD | GCA_001553435_07267 | GCA_001553435_05583 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.948 |
GCA_001553435_07267 | murE | GCA_001553435_07267 | GCA_001553435_05580 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.926 |
GCA_001553435_07267 | murF | GCA_001553435_07267 | GCA_001553435_05581 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.965 |
GCA_001553435_07267 | murG | GCA_001553435_07267 | GCA_001553435_05584 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.909 |
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