Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001553435_02301 | GCA_001553435_06544 | GCA_001553435_02301 | GCA_001553435_06544 | Unannotated protein. | Unannotated protein. | 0.882 |
GCA_001553435_02301 | SHXM_07437 | GCA_001553435_02301 | GCA_001553435_03592 | Unannotated protein. | Unannotated protein; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.916 |
GCA_001553435_02301 | argB | GCA_001553435_02301 | GCA_001553435_02764 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.968 |
GCA_001553435_02301 | argC | GCA_001553435_02301 | GCA_001553435_02766 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.938 |
GCA_001553435_02301 | argD | GCA_001553435_02301 | GCA_001553435_02763 | Unannotated protein. | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.881 |
GCA_001553435_02301 | argG | GCA_001553435_02301 | GCA_001553435_02751 | Unannotated protein. | Unannotated protein; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.995 |
GCA_001553435_02301 | argG-2 | GCA_001553435_02301 | GCA_001553435_03152 | Unannotated protein. | Unannotated protein; Belongs to the argininosuccinate synthase family. Type 2 subfamily. | 0.983 |
GCA_001553435_02301 | argJ | GCA_001553435_02301 | GCA_001553435_02765 | Unannotated protein. | Unannotated protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.956 |
GCA_001553435_02301 | argR | GCA_001553435_02301 | GCA_001553435_02762 | Unannotated protein. | Unannotated protein; Regulates arginine biosynthesis genes. | 0.927 |
GCA_001553435_06544 | GCA_001553435_02301 | GCA_001553435_06544 | GCA_001553435_02301 | Unannotated protein. | Unannotated protein. | 0.882 |
GCA_001553435_06544 | SHXM_07437 | GCA_001553435_06544 | GCA_001553435_03592 | Unannotated protein. | Unannotated protein; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.905 |
GCA_001553435_06544 | argB | GCA_001553435_06544 | GCA_001553435_02764 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.964 |
GCA_001553435_06544 | argC | GCA_001553435_06544 | GCA_001553435_02766 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.935 |
GCA_001553435_06544 | argD | GCA_001553435_06544 | GCA_001553435_02763 | Unannotated protein. | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.877 |
GCA_001553435_06544 | argG | GCA_001553435_06544 | GCA_001553435_02751 | Unannotated protein. | Unannotated protein; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.996 |
GCA_001553435_06544 | argG-2 | GCA_001553435_06544 | GCA_001553435_03152 | Unannotated protein. | Unannotated protein; Belongs to the argininosuccinate synthase family. Type 2 subfamily. | 0.990 |
GCA_001553435_06544 | argH | GCA_001553435_06544 | GCA_001553435_02750 | Unannotated protein. | Unannotated protein. | 0.882 |
GCA_001553435_06544 | argJ | GCA_001553435_06544 | GCA_001553435_02765 | Unannotated protein. | Unannotated protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.945 |
GCA_001553435_06544 | argR | GCA_001553435_06544 | GCA_001553435_02762 | Unannotated protein. | Unannotated protein; Regulates arginine biosynthesis genes. | 0.923 |
SHXM_07437 | GCA_001553435_02301 | GCA_001553435_03592 | GCA_001553435_02301 | Unannotated protein; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Unannotated protein. | 0.916 |
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