Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHXM_01425 | SHXM_03378 | GCA_001553435_00092 | GCA_001553435_03288 | Unannotated protein; Belongs to the precorrin methyltransferase family. | Unannotated protein. | 0.664 |
SHXM_01425 | SHXM_04837 | GCA_001553435_00092 | GCA_001553435_08316 | Unannotated protein; Belongs to the precorrin methyltransferase family. | Unannotated protein. | 0.672 |
SHXM_01425 | egtB | GCA_001553435_00092 | GCA_001553435_06678 | Unannotated protein; Belongs to the precorrin methyltransferase family. | Unannotated protein; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine; Belongs to the EgtB family. | 0.669 |
SHXM_01425 | nfo | GCA_001553435_00092 | GCA_001553435_05552 | Unannotated protein; Belongs to the precorrin methyltransferase family. | Unannotated protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.672 |
SHXM_01425 | pyrF | GCA_001553435_00092 | GCA_001553435_02655 | Unannotated protein; Belongs to the precorrin methyltransferase family. | Unannotated protein; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.672 |
SHXM_03371 | SHXM_03372 | GCA_001553435_03277 | GCA_001553435_03278 | Unannotated protein. | Unannotated protein. | 0.748 |
SHXM_03371 | SHXM_03373 | GCA_001553435_03277 | GCA_001553435_03279 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.748 |
SHXM_03371 | SHXM_03378 | GCA_001553435_03277 | GCA_001553435_03288 | Unannotated protein. | Unannotated protein. | 0.565 |
SHXM_03371 | SHXM_03379 | GCA_001553435_03277 | GCA_001553435_03289 | Unannotated protein. | Unannotated protein. | 0.565 |
SHXM_03372 | SHXM_03371 | GCA_001553435_03278 | GCA_001553435_03277 | Unannotated protein. | Unannotated protein. | 0.748 |
SHXM_03372 | SHXM_03373 | GCA_001553435_03278 | GCA_001553435_03279 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.940 |
SHXM_03372 | SHXM_03378 | GCA_001553435_03278 | GCA_001553435_03288 | Unannotated protein. | Unannotated protein. | 0.626 |
SHXM_03372 | SHXM_03379 | GCA_001553435_03278 | GCA_001553435_03289 | Unannotated protein. | Unannotated protein. | 0.573 |
SHXM_03373 | SHXM_03371 | GCA_001553435_03279 | GCA_001553435_03277 | Unannotated protein; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Unannotated protein. | 0.748 |
SHXM_03373 | SHXM_03372 | GCA_001553435_03279 | GCA_001553435_03278 | Unannotated protein; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Unannotated protein. | 0.940 |
SHXM_03373 | SHXM_03378 | GCA_001553435_03279 | GCA_001553435_03288 | Unannotated protein; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Unannotated protein. | 0.565 |
SHXM_03373 | SHXM_03379 | GCA_001553435_03279 | GCA_001553435_03289 | Unannotated protein; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Unannotated protein. | 0.565 |
SHXM_03378 | SHXM_01425 | GCA_001553435_03288 | GCA_001553435_00092 | Unannotated protein. | Unannotated protein; Belongs to the precorrin methyltransferase family. | 0.664 |
SHXM_03378 | SHXM_03371 | GCA_001553435_03288 | GCA_001553435_03277 | Unannotated protein. | Unannotated protein. | 0.565 |
SHXM_03378 | SHXM_03372 | GCA_001553435_03288 | GCA_001553435_03278 | Unannotated protein. | Unannotated protein. | 0.626 |
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