Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHXM_04641 | SHXM_05941 | GCA_001553435_04413 | GCA_001553435_03955 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.659 |
SHXM_04641 | SHXM_06735 | GCA_001553435_04413 | GCA_001553435_00807 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.659 |
SHXM_05203 | SHXM_05941 | GCA_001553435_04628 | GCA_001553435_03955 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.659 |
SHXM_05203 | SHXM_06735 | GCA_001553435_04628 | GCA_001553435_00807 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.659 |
SHXM_05940 | SHXM_05941 | GCA_001553435_03956 | GCA_001553435_03955 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.999 |
SHXM_05940 | SHXM_06735 | GCA_001553435_03956 | GCA_001553435_00807 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.661 |
SHXM_05940 | SHXM_06736 | GCA_001553435_03956 | GCA_001553435_00808 | Unannotated protein. | Unannotated protein. | 0.455 |
SHXM_05941 | SHXM_04641 | GCA_001553435_03955 | GCA_001553435_04413 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein. | 0.659 |
SHXM_05941 | SHXM_05203 | GCA_001553435_03955 | GCA_001553435_04628 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein. | 0.659 |
SHXM_05941 | SHXM_05940 | GCA_001553435_03955 | GCA_001553435_03956 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein. | 0.999 |
SHXM_05941 | SHXM_06664 | GCA_001553435_03955 | GCA_001553435_00726 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein. | 0.659 |
SHXM_05941 | SHXM_06735 | GCA_001553435_03955 | GCA_001553435_00807 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.640 |
SHXM_05941 | SHXM_06736 | GCA_001553435_03955 | GCA_001553435_00808 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein. | 0.659 |
SHXM_05941 | rpoA | GCA_001553435_03955 | GCA_001553435_01115 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.667 |
SHXM_05941 | rpoB | GCA_001553435_03955 | GCA_001553435_03819 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.669 |
SHXM_05941 | rpoC | GCA_001553435_03955 | GCA_001553435_03818 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.711 |
SHXM_05941 | rpoZ | GCA_001553435_03955 | GCA_001553435_02652 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.667 |
SHXM_06664 | SHXM_05941 | GCA_001553435_00726 | GCA_001553435_03955 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.659 |
SHXM_06664 | SHXM_06735 | GCA_001553435_00726 | GCA_001553435_00807 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.664 |
SHXM_06735 | SHXM_04641 | GCA_001553435_00807 | GCA_001553435_04413 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | Unannotated protein. | 0.659 |
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